Eliminate clutter by reorganizing the Lit test files for clang-tidy:
- Move checkers/<module>-* to checkers/<module>/*.
- Move module specific inputs from Inputs to <module>/Inputs. Remove any module prefix from the file or subdirectory name as they are no longer needed.
- Introduce a Lit substitution %clang_tidy_headers for the system headers in checkers/Inputs/Headers and use this throughout. This avoids referencing system headers through a relative path to the parent directory and makes it clear that these fake system headers are shared among all modules.
- Update add_new_check.py to follow the above conventions when creating the boiler plate test files for a new check.
- Update Contributing.rst to describe per-module Inputs directory and fix link to test source code.