rL254966 added --sysroot=. to prevent accidental including system headers.
It caused hassle to FreeBSD (D17383)/NetBSD. The next problem is that
we want to include features.h (usually /usr/include/features.h) to detect __GLIBC__.
At this point it seems that --sysroot=. adds lots of inconvenience so we disable it for now.
If there are better ways preventing accidental system header inclusion
we can consider it again.