It looks like MCRegAliasIterator can visit the same physical register twice. When this happens in this code in LICM we end up setting the PhysRegDef and then later in the same loop visit the register again. Now we see that PhysRegDef is set from the earlier iteration so now set PhysRegClobber.
This patch splits the loop so we have one that uses the previous value of PhysRegDef to update PhysRegClobber and second loop that updates PhysRegDef.
The X86 atomic test is an improvement. I had to add sideeffect to the two shrink wrapping tests to prevent hoisting from occurring. I'm not sure about the AMDGPU tests. It looks like the branch instruction changed at end the of the loops. And in the branch-relaxation test I think there is now "and vcc, exec, -1" instruction that wasn't there before.