This fixes https://bugs.llvm.org/show_bug.cgi?id=40786
("obj2yaml symbol output missing section index for SHN_ABS and SHN_COMMON symbols")
Since SHN_ABS and SHN_COMMON symbols are special, we should preserve
the st_shndx for them. The patch does this for them and the other special symbols.
The test case is based on the test provided by James Henderson at the bug page!