Ensure that fragments are bundle aligned when instruction bundling
is enabled and the -mc-relax-all flag is set. This is implicitly
assumed by the bundle padding implementation but this assumption
does not hold when custom alignment is being used.
The change was tested by running PNaCl toolchain trybots with
-mc-relax-all flag set.
Fixes https://code.google.com/p/nativeclient/issues/detail?id=4063