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Robustify update_test_checks.py to non-autogened tests, and add a mode to skip…

Description

Robustify update_test_checks.py to non-autogened tests, and add a mode to skip non-autogenerated ones

Intended use case is:
./utils/update_test_checks.py test/Transform/PassDir/* --update-only
(i.e. rapidly be able to see changes in autogened filed, before handing non-autogened tests individually)

Differential Revision: https://reviews.llvm.org/D65610