diff --git a/lld/COFF/Writer.cpp b/lld/COFF/Writer.cpp
--- a/lld/COFF/Writer.cpp
+++ b/lld/COFF/Writer.cpp
@@ -601,6 +601,9 @@
 void Writer::run() {
   ScopedTimer t1(codeLayoutTimer);
 
+  // First, clear the output sections from previous runs
+  outputSections.clear();
+
   createImportTables();
   createSections();
   createMiscChunks();