Index: tools/clang-fuzzer/CMakeLists.txt
===================================================================
--- tools/clang-fuzzer/CMakeLists.txt
+++ tools/clang-fuzzer/CMakeLists.txt
@@ -39,6 +39,9 @@
 
   # Build the protobuf->C++ translation library and driver.
   add_clang_subdirectory(proto-to-cxx)
+  
+  # Build the fuzzer initialization library.
+  add_clang_subdirectory(fuzzer-initialize)
 
   # Build the protobuf fuzzer
   add_clang_executable(clang-proto-fuzzer
@@ -52,6 +55,7 @@
     ${PROTOBUF_LIBRARIES}
     ${LLVM_LIB_FUZZING_ENGINE}
     clangCXXProto
+    clangFuzzerInitialize
     clangHandleCXX
     clangProtoToCXX
     )
Index: tools/clang-fuzzer/ExampleClangProtoFuzzer.cpp
===================================================================
--- tools/clang-fuzzer/ExampleClangProtoFuzzer.cpp
+++ tools/clang-fuzzer/ExampleClangProtoFuzzer.cpp
@@ -17,28 +17,12 @@
 #include "cxx_proto.pb.h"
 #include "handle-cxx/handle_cxx.h"
 #include "proto-to-cxx/proto_to_cxx.h"
-
+#include "fuzzer-initialize/fuzzer_initialize.h"
 #include "src/libfuzzer/libfuzzer_macro.h"
 
-#include <cstring>
-
 using namespace clang_fuzzer;
 
-static std::vector<const char *> CLArgs;
-
-extern "C" int LLVMFuzzerInitialize(int *argc, char ***argv) {
-  CLArgs.push_back("-O2");
-  for (int I = 1; I < *argc; I++) {
-    if (strcmp((*argv)[I], "-ignore_remaining_args=1") == 0) {
-      for (I++; I < *argc; I++)
-        CLArgs.push_back((*argv)[I]);
-      break;
-    }
-  }
-  return 0;
-}
-
 DEFINE_BINARY_PROTO_FUZZER(const Function& input) {
   auto S = FunctionToString(input);
-  HandleCXX(S, CLArgs);
+  HandleCXX(S, GetCLArgs());
 }
Index: tools/clang-fuzzer/fuzzer-initialize/CMakeLists.txt
===================================================================
--- /dev/null
+++ tools/clang-fuzzer/fuzzer-initialize/CMakeLists.txt
@@ -0,0 +1,3 @@
+set(LLVM_LINK_COMPONENTS ${LLVM_TARGETS_TO_BUILD} Support)
+
+add_clang_library(clangFuzzerInitialize fuzzer_initialize.cpp)
Index: tools/clang-fuzzer/fuzzer-initialize/fuzzer_initialize.h
===================================================================
--- /dev/null
+++ tools/clang-fuzzer/fuzzer-initialize/fuzzer_initialize.h
@@ -0,0 +1,20 @@
+//==-- fuzzer_initialize.h - Fuzz Clang ------------------------------------==//
+//
+//                     The LLVM Compiler Infrastructure
+//
+// This file is distributed under the University of Illinois Open Source
+// License. See LICENSE.TXT for details.
+//
+//===----------------------------------------------------------------------===//
+//
+// Defines a function that returns the command line arguments for a specific
+// call to the fuzz target.
+//
+//===----------------------------------------------------------------------===//
+
+#include <vector>
+
+namespace clang_fuzzer {
+const std::vector<const char *>& GetCLArgs();
+}
+
Index: tools/clang-fuzzer/fuzzer-initialize/fuzzer_initialize.cpp
===================================================================
--- tools/clang-fuzzer/fuzzer-initialize/fuzzer_initialize.cpp
+++ tools/clang-fuzzer/fuzzer-initialize/fuzzer_initialize.cpp
@@ -1,4 +1,4 @@
-//===-- ExampleClangProtoFuzzer.cpp - Fuzz Clang --------------------------===//
+//===-- fuzzer_initialize.cpp - Fuzz Clang --------------------------------===//
 //
 //                     The LLVM Compiler Infrastructure
 //
@@ -8,24 +8,28 @@
 //===----------------------------------------------------------------------===//
 ///
 /// \file
-/// This file implements a function that runs Clang on a single
-///  input and uses libprotobuf-mutator to find new inputs. This function is
-///  then linked into the Fuzzer library.
+/// This file implements two functions: one that returns the command line 
+/// arguments for a given call to the fuzz target and one that initializes
+/// the fuzzer with the correct command line arguments. 
 ///
 //===----------------------------------------------------------------------===//
 
-#include "cxx_proto.pb.h"
-#include "handle-cxx/handle_cxx.h"
-#include "proto-to-cxx/proto_to_cxx.h"
-
-#include "src/libfuzzer/libfuzzer_macro.h"
-
+#include "fuzzer_initialize.h"
 #include <cstring>
 
 using namespace clang_fuzzer;
 
+
+namespace clang_fuzzer {
+
 static std::vector<const char *> CLArgs;
 
+const std::vector<const char *>& GetCLArgs() {
+  return CLArgs;
+}
+
+}
+
 extern "C" int LLVMFuzzerInitialize(int *argc, char ***argv) {
   CLArgs.push_back("-O2");
   for (int I = 1; I < *argc; I++) {
@@ -38,7 +42,3 @@
   return 0;
 }
 
-DEFINE_BINARY_PROTO_FUZZER(const Function& input) {
-  auto S = FunctionToString(input);
-  HandleCXX(S, CLArgs);
-}