Index: docs/doxygen.cfg.in
===================================================================
--- docs/doxygen.cfg.in
+++ docs/doxygen.cfg.in
@@ -132,7 +132,7 @@
 # shortest path that makes the file name unique will be used
 # The default value is: YES.
 
-FULL_PATH_NAMES        = NO
+FULL_PATH_NAMES        = YES
 
 # The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path.
 # Stripping is only done if one of the specified strings matches the left-hand
@@ -144,7 +144,7 @@
 # will be relative from the directory where doxygen is started.
 # This tag requires that the tag FULL_PATH_NAMES is set to YES.
 
-STRIP_FROM_PATH        = ../..
+STRIP_FROM_PATH        = @abs_srcdir@/..
 
 # The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the
 # path mentioned in the documentation of a class, which tells the reader which
@@ -153,7 +153,7 @@
 # specify the list of include paths that are normally passed to the compiler
 # using the -I flag.
 
-STRIP_FROM_INC_PATH    =
+STRIP_FROM_INC_PATH    = @abs_srcdir@/../include
 
 # If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but
 # less readable) file names. This can be useful is your file systems doesn't
@@ -513,7 +513,7 @@
 # files with double quotes in the documentation rather than with sharp brackets.
 # The default value is: NO.
 
-FORCE_LOCAL_INCLUDES   = NO
+FORCE_LOCAL_INCLUDES   = YES
 
 # If the INLINE_INFO tag is set to YES then a tag [inline] is inserted in the
 # documentation for inline members.