Index: ELF/LinkerScript.cpp
===================================================================
--- ELF/LinkerScript.cpp
+++ ELF/LinkerScript.cpp
@@ -595,8 +595,7 @@
   }
 
   // Add output sections to program headers.
-  PhdrEntry<ELFT> *Load = nullptr;
-  uintX_t Flags = PF_R;
+  unsigned LoadId = UINT_MAX;
   for (OutputSectionBase<ELFT> *Sec : *OutputSections) {
     if (!(Sec->getFlags() & SHF_ALLOC))
       break;
@@ -608,16 +607,25 @@
         Ret[Id].add(Sec);
         if (Opt.PhdrsCommands[Id].Flags == UINT_MAX)
           Ret[Id].H.p_flags |= Sec->getPhdrFlags();
+        if (Ret[Id].H.p_type == PT_LOAD)
+          LoadId = Id;
       }
     } else {
       // If we have no load segment or flags've changed then we want new load
       // segment.
       uintX_t NewFlags = Sec->getPhdrFlags();
-      if (Load == nullptr || Flags != NewFlags) {
-        Load = &*Ret.emplace(Ret.end(), PT_LOAD, NewFlags);
-        Flags = NewFlags;
+      uintX_t Flags = 0;
+      if (LoadId != UINT_MAX)
+        Flags = Opt.PhdrsCommands[LoadId].Flags == UINT_MAX
+                    ? UINT_MAX
+                    : Ret[LoadId].H.p_flags;
+
+      if ((NewFlags & Flags) != NewFlags) {
+        Ret.emplace_back(PT_LOAD, 0);
+        LoadId = Ret.size() - 1;
       }
-      Load->add(Sec);
+      Ret[LoadId].add(Sec);
+      Ret[LoadId].H.p_flags |= NewFlags;
     }
   }
   return Ret;
Index: test/ELF/linkerscript/phdrs-flags.s
===================================================================
--- test/ELF/linkerscript/phdrs-flags.s
+++ test/ELF/linkerscript/phdrs-flags.s
@@ -6,9 +6,18 @@
 # RUN:           .text : {*(.text*)} :all \
 # RUN:           .foo : {*(.foo.*)} :all \
 # RUN:           .data : {*(.data.*)} :all}" > %t.script
-
 # RUN: ld.lld -o %t1 --script %t.script %t
 # RUN: llvm-readobj -program-headers %t1 | FileCheck %s
+
+# RUN: echo "PHDRS {all PT_LOAD FILEHDR PHDRS FLAGS (0x1);} \
+# RUN:       SECTIONS { \
+# RUN:           . = 0x10000200; \
+# RUN:           .text : {*(.text*)} :all \
+# RUN:           .foo : {*(.foo.*)}  \
+# RUN:           .data : {*(.data.*)} }" > %t.script
+# RUN: ld.lld -o %t1 --script %t.script %t
+# RUN: llvm-readobj -program-headers %t1 | FileCheck --check-prefix=DEFHDR %s
+
 # CHECK:     ProgramHeaders [
 # CHECK-NEXT:  ProgramHeader {
 # CHECK-NEXT:    Type: PT_LOAD (0x1)
@@ -22,6 +31,34 @@
 # CHECK-NEXT:      PF_X (0x1)
 # CHECK-NEXT:    ]
 
+# DEFHDR:     ProgramHeaders [
+# DEFHDR-NEXT:  ProgramHeader {
+# DEFHDR-NEXT:    Type: PT_LOAD (0x1)
+# DEFHDR-NEXT:    Offset: 0x0
+# DEFHDR-NEXT:    VirtualAddress: 0x10000000
+# DEFHDR-NEXT:    PhysicalAddress: 0x10000000
+# DEFHDR-NEXT:    FileSize: 513
+# DEFHDR-NEXT:    MemSize: 513
+# DEFHDR-NEXT:    Flags [ (0x1)
+# DEFHDR-NEXT:      PF_X (0x1)
+# DEFHDR-NEXT:    ]
+# DEFHDR-NEXT:    Alignment: 4096
+# DEFHDR-NEXT:  }
+# DEFHDR-NEXT:  ProgramHeader {
+# DEFHDR-NEXT:    Type: PT_LOAD (0x1)
+# DEFHDR-NEXT:    Offset: 0x201
+# DEFHDR-NEXT:    VirtualAddress: 0x10000201
+# DEFHDR-NEXT:    PhysicalAddress: 0x10000201
+# DEFHDR-NEXT:    FileSize: 8
+# DEFHDR-NEXT:    MemSize: 8
+# DEFHDR-NEXT:    Flags [ (0x6)
+# DEFHDR-NEXT:      PF_R (0x4)
+# DEFHDR-NEXT:      PF_W (0x2)
+# DEFHDR-NEXT:    ]
+# DEFHDR-NEXT:    Alignment: 4096
+# DEFHDR-NEXT:  }
+# DEFHDR-NEXT: ]
+
 .global _start
 _start:
  nop
Index: test/ELF/linkerscript/phdrs.s
===================================================================
--- test/ELF/linkerscript/phdrs.s
+++ test/ELF/linkerscript/phdrs.s
@@ -19,6 +19,15 @@
 # RUN: ld.lld -o %t1 --script %t.script %t
 # RUN: llvm-readobj -program-headers %t1 | FileCheck --check-prefix=AT %s
 
+# RUN: echo "PHDRS {all PT_LOAD FILEHDR PHDRS ;} \
+# RUN:       SECTIONS { \
+# RUN:           . = 0x10000200; \
+# RUN:           .text : {*(.text*)} :all \
+# RUN:           .foo : {*(.foo.*)}  \
+# RUN:           .data : {*(.data.*)} }" > %t.script
+# RUN: ld.lld -o %t1 --script %t.script %t
+# RUN: llvm-readobj -program-headers %t1 | FileCheck --check-prefix=DEFHDR %s
+
 # CHECK:     ProgramHeaders [
 # CHECK-NEXT:  ProgramHeader {
 # CHECK-NEXT:    Type: PT_LOAD (0x1)
@@ -47,6 +56,20 @@
 # AT-NEXT:        PF_X (0x1)
 # AT-NEXT:      ]
 
+# DEFHDR:     ProgramHeaders [
+# DEFHDR-NEXT:  ProgramHeader {
+# DEFHDR-NEXT:    Type: PT_LOAD (0x1)
+# DEFHDR-NEXT:    Offset: 0x0
+# DEFHDR-NEXT:    VirtualAddress: 0x10000000
+# DEFHDR-NEXT:    PhysicalAddress: 0x10000000
+# DEFHDR-NEXT:    FileSize: 521
+# DEFHDR-NEXT:    MemSize: 521
+# DEFHDR-NEXT:    Flags [ (0x7)
+# DEFHDR-NEXT:      PF_R (0x4)
+# DEFHDR-NEXT:      PF_W (0x2)
+# DEFHDR-NEXT:      PF_X (0x1)
+# DEFHDR-NEXT:    ]
+
 .global _start
 _start:
  nop