diff --git a/llvm/lib/Transforms/Utils/FunctionComparator.cpp b/llvm/lib/Transforms/Utils/FunctionComparator.cpp
--- a/llvm/lib/Transforms/Utils/FunctionComparator.cpp
+++ b/llvm/lib/Transforms/Utils/FunctionComparator.cpp
@@ -852,8 +852,15 @@
       for (unsigned i = 0, e = InstL->getNumOperands(); i != e; ++i) {
         Value *OpL = InstL->getOperand(i);
         Value *OpR = InstR->getOperand(i);
-        if (int Res = cmpValues(OpL, OpR))
+
+        if (auto *MDL = dyn_cast<MetadataAsValue>(OpL)) {
+          auto *MDR = cast<MetadataAsValue>(OpR);
+          if (MDL->getMetadata() != MDR->getMetadata())
+            return -1;
+        } else if (int Res = cmpValues(OpL, OpR)) {
           return Res;
+        }
+
         // cmpValues should ensure this is true.
         assert(cmpTypes(OpL->getType(), OpR->getType()) == 0);
       }
diff --git a/llvm/test/Transforms/MergeFunc/cfi-function-merging.ll b/llvm/test/Transforms/MergeFunc/cfi-function-merging.ll
new file mode 100644
--- /dev/null
+++ b/llvm/test/Transforms/MergeFunc/cfi-function-merging.ll
@@ -0,0 +1,41 @@
+;; Check the cases involving internal CFI instrumented functions where we do not expect functions to be merged.
+; RUN: opt -S -passes=mergefunc < %s | FileCheck %s
+
+
+target datalayout = "e-m:e-i8:8:32-i16:16:32-i64:64-i128:128-n32:64-S128"
+target triple = "aarch64-none-linux-android28"
+
+; Function Attrs: nocallback nofree nosync nounwind readnone speculatable willreturn
+declare i1 @llvm.type.test(ptr, metadata) #6
+
+define internal void @A__on_zero_sharedEv(ptr noundef nonnull align 8 dereferenceable(32) %this) unnamed_addr #3 align 2 {
+; CHECK-LABEL: @A__on_zero_sharedEv
+entry:
+  %this.addr = alloca ptr, align 8
+  store ptr %this, ptr %this.addr, align 8
+  %this1 = load ptr, ptr %this.addr, align 8
+  %vtable = load ptr, ptr %this1, align 8
+  %0 = call i1 @llvm.type.test(ptr %vtable, metadata !11), !nosanitize !47
+  ret void
+}
+
+; Function Attrs: mustprogress noinline nounwind optnone uwtable
+define internal void @B__on_zero_sharedEv(ptr noundef nonnull align 8 dereferenceable(32) %this) unnamed_addr #3 align 2 {
+; CHECK-LABEL: @B__on_zero_sharedEv
+entry:
+  %this.addr = alloca ptr, align 8
+  store ptr %this, ptr %this.addr, align 8
+  %this1 = load ptr, ptr %this.addr, align 8
+  %vtable = load ptr, ptr %this1, align 8
+  %0 = call i1 @llvm.type.test(ptr %vtable, metadata !22), !nosanitize !47
+  ret void
+}
+
+attributes #3 = { mustprogress noinline nounwind optnone uwtable "frame-pointer"="non-leaf" "min-legal-vector-width"="0" "no-trapping-math"="true" "stack-protector-buffer-size"="8" "target-cpu"="generic" "target-features"="+fix-cortex-a53-835769,+neon,+outline-atomics,+v8a" }
+attributes #6 = { nocallback nofree nosync nounwind readnone speculatable willreturn }
+
+!10 = !{i64 16, !11}
+!11 = distinct !{}
+!21 = !{i64 16, !22}
+!22 = distinct !{}
+!47 = !{}