diff --git a/clang-tools-extra/include-cleaner/test/tool.cpp b/clang-tools-extra/include-cleaner/test/tool.cpp
--- a/clang-tools-extra/include-cleaner/test/tool.cpp
+++ b/clang-tools-extra/include-cleaner/test/tool.cpp
@@ -14,6 +14,10 @@
 //      REMOVE: - "foobar.h"
 //  REMOVE-NOT: + "foo.h"
 
+//        RUN: clang-include-cleaner -print=changes %s --ignore-headers="foobar\.h,foo\.h" -- -I%S/Inputs/ | FileCheck --match-full-lines --allow-empty --check-prefix=IGNORE %s
+// IGNORE-NOT: - "foobar.h"
+// IGNORE-NOT: + "foo.h"
+
 //        RUN: clang-include-cleaner -print %s -- -I%S/Inputs/ | FileCheck --match-full-lines --check-prefix=PRINT %s
 //      PRINT: #include "foo.h"
 //  PRINT-NOT: {{^}}#include "foobar.h"{{$}}
diff --git a/clang-tools-extra/include-cleaner/tool/IncludeCleaner.cpp b/clang-tools-extra/include-cleaner/tool/IncludeCleaner.cpp
--- a/clang-tools-extra/include-cleaner/tool/IncludeCleaner.cpp
+++ b/clang-tools-extra/include-cleaner/tool/IncludeCleaner.cpp
@@ -14,8 +14,10 @@
 #include "clang/Lex/Preprocessor.h"
 #include "clang/Tooling/CommonOptionsParser.h"
 #include "clang/Tooling/Tooling.h"
+#include "llvm/ADT/STLExtras.h"
 #include "llvm/ADT/StringRef.h"
 #include "llvm/Support/CommandLine.h"
+#include "llvm/Support/FormatVariadic.h"
 #include "llvm/Support/Signals.h"
 #include "llvm/Support/raw_ostream.h"
 
@@ -47,6 +49,13 @@
     cl::cat(IncludeCleaner),
 };
 
+cl::opt<std::string> IgnoreHeaders{
+    "ignore-headers",
+    cl::desc("A comma-separated list of headers to ignore."),
+    cl::init(""),
+    cl::cat(IncludeCleaner),
+};
+
 enum class PrintStyle { Changes, Final };
 cl::opt<PrintStyle> Print{
     "print",
@@ -117,6 +126,27 @@
       return;
     }
 
+    std::vector<llvm::Regex> HeaderFilters;
+    llvm::SmallVector<StringRef> Headers;
+    llvm::StringRef(IgnoreHeaders).split(Headers, ',', -1, /*KeepEmpty*/ false);
+    for (auto HeaderPattern : Headers) {
+      std::string AnchoredPattern = "(" + HeaderPattern.str() + ")$";
+      llvm::Regex CompiledRegex(AnchoredPattern);
+      std::string RegexError;
+      if (!CompiledRegex.isValid(RegexError)) {
+        llvm::errs() << llvm::formatv("Invalid regular expression '{0}': {1}\n",
+                                      HeaderPattern, RegexError);
+        return;
+      }
+      HeaderFilters.push_back(std::move(CompiledRegex));
+    }
+    auto Filter = [&HeaderFilters](llvm::StringRef Path) {
+      for (const auto &F : HeaderFilters)
+        if (F.match(Path))
+          return true;
+      return false;
+    };
+
     if (!HTMLReportPath.empty())
       writeHTML();
 
@@ -137,10 +167,16 @@
     if (Print.getNumOccurrences()) {
       switch (Print) {
       case PrintStyle::Changes:
-        for (const Include *I : Results.Unused)
+        for (const Include *I : Results.Unused) {
+          if (Filter(I->Resolved->tryGetRealPathName()))
+            continue;
           llvm::outs() << "- " << I->quote() << " @Line:" << I->Line << "\n";
-        for (const auto &I : Results.Missing)
+        }
+        for (const auto &I : Results.Missing) {
+          if (Filter(llvm::StringRef(I).trim("<>\"")))
+            continue;
           llvm::outs() << "+ " << I << "\n";
+        }
         break;
       case PrintStyle::Final:
         llvm::outs() << Final;