diff --git a/clang-tools-extra/clangd/IncludeCleaner.cpp b/clang-tools-extra/clangd/IncludeCleaner.cpp
--- a/clang-tools-extra/clangd/IncludeCleaner.cpp
+++ b/clang-tools-extra/clangd/IncludeCleaner.cpp
@@ -104,10 +104,6 @@
   }
   assert(Inc.HeaderID);
   auto HID = static_cast<IncludeStructure::HeaderID>(*Inc.HeaderID);
-  // FIXME: Ignore the headers with IWYU export pragmas for now, remove this
-  // check when we have more precise tracking of exported headers.
-  if (AST.getIncludeStructure().hasIWYUExport(HID))
-    return false;
   auto FE = AST.getSourceManager().getFileManager().getFileRef(
       AST.getIncludeStructure().getRealPath(HID));
   assert(FE);
diff --git a/clang-tools-extra/clangd/unittests/IncludeCleanerTests.cpp b/clang-tools-extra/clangd/unittests/IncludeCleanerTests.cpp
--- a/clang-tools-extra/clangd/unittests/IncludeCleanerTests.cpp
+++ b/clang-tools-extra/clangd/unittests/IncludeCleanerTests.cpp
@@ -300,10 +300,9 @@
   ParsedAST AST = TU.build();
 
   EXPECT_THAT(AST.getDiagnostics(), llvm::ValueIs(IsEmpty()));
-  // FIXME: This is not correct: foo.h is unused but is not diagnosed as such
-  // because we ignore headers with IWYU export pragmas for now.
   IncludeCleanerFindings Findings = computeIncludeCleanerFindings(AST);
-  EXPECT_THAT(Findings.UnusedIncludes, IsEmpty());
+  EXPECT_THAT(Findings.UnusedIncludes,
+              ElementsAre(Pointee(writtenInclusion("\"foo.h\""))));
 }
 
 TEST(IncludeCleaner, NoDiagsForObjC) {