diff --git a/compiler-rt/include/profile/InstrProfData.inc b/compiler-rt/include/profile/InstrProfData.inc
--- a/compiler-rt/include/profile/InstrProfData.inc
+++ b/compiler-rt/include/profile/InstrProfData.inc
@@ -129,6 +129,7 @@
 #endif
 INSTR_PROF_RAW_HEADER(uint64_t, Magic, __llvm_profile_get_magic())
 INSTR_PROF_RAW_HEADER(uint64_t, Version, __llvm_profile_get_version())
+INSTR_PROF_RAW_HEADER(uint64_t, BinaryIdsSize, __llvm_write_binary_ids(NULL))
 INSTR_PROF_RAW_HEADER(uint64_t, DataSize, DataSize)
 INSTR_PROF_RAW_HEADER(uint64_t, PaddingBytesBeforeCounters, PaddingBytesBeforeCounters)
 INSTR_PROF_RAW_HEADER(uint64_t, CountersSize, CountersSize)
@@ -137,7 +138,6 @@
 INSTR_PROF_RAW_HEADER(uint64_t, CountersDelta, (uintptr_t)CountersBegin)
 INSTR_PROF_RAW_HEADER(uint64_t, NamesDelta, (uintptr_t)NamesBegin)
 INSTR_PROF_RAW_HEADER(uint64_t, ValueKindLast, IPVK_Last)
-INSTR_PROF_RAW_HEADER(uint64_t, BinaryIdsSize, __llvm_write_binary_ids(NULL))
 #undef INSTR_PROF_RAW_HEADER
 /* INSTR_PROF_RAW_HEADER  end */
 
@@ -646,7 +646,7 @@
         (uint64_t)'f' << 16 | (uint64_t)'R' << 8 | (uint64_t)129
 
 /* Raw profile format version (start from 1). */
-#define INSTR_PROF_RAW_VERSION 6
+#define INSTR_PROF_RAW_VERSION 7
 /* Indexed profile format version (start from 1). */
 #define INSTR_PROF_INDEX_VERSION 7
 /* Coverage mapping format version (start from 0). */
diff --git a/compiler-rt/lib/profile/InstrProfilingBuffer.c b/compiler-rt/lib/profile/InstrProfilingBuffer.c
--- a/compiler-rt/lib/profile/InstrProfilingBuffer.c
+++ b/compiler-rt/lib/profile/InstrProfilingBuffer.c
@@ -116,7 +116,7 @@
       DataSize, CountersSize, NamesSize, &PaddingBytesBeforeCounters,
       &PaddingBytesAfterCounters, &PaddingBytesAfterNames);
 
-  return sizeof(__llvm_profile_header) +
+  return sizeof(__llvm_profile_header) + __llvm_write_binary_ids(NULL) +
          (DataSize * sizeof(__llvm_profile_data)) + PaddingBytesBeforeCounters +
          (CountersSize * sizeof(uint64_t)) + PaddingBytesAfterCounters +
          NamesSize + PaddingBytesAfterNames;
diff --git a/compiler-rt/lib/profile/InstrProfilingMerge.c b/compiler-rt/lib/profile/InstrProfilingMerge.c
--- a/compiler-rt/lib/profile/InstrProfilingMerge.c
+++ b/compiler-rt/lib/profile/InstrProfilingMerge.c
@@ -22,6 +22,7 @@
 COMPILER_RT_VISIBILITY
 uint64_t lprofGetLoadModuleSignature() {
   /* A very fast way to compute a module signature.  */
+  uint64_t Version = __llvm_profile_get_version();
   uint64_t CounterSize = (uint64_t)(__llvm_profile_end_counters() -
                                     __llvm_profile_begin_counters());
   uint64_t DataSize = __llvm_profile_get_data_size(__llvm_profile_begin_data(),
@@ -33,7 +34,7 @@
   const __llvm_profile_data *FirstD = __llvm_profile_begin_data();
 
   return (NamesSize << 40) + (CounterSize << 30) + (DataSize << 20) +
-         (NumVnodes << 10) + (DataSize > 0 ? FirstD->NameRef : 0);
+         (NumVnodes << 10) + (DataSize > 0 ? FirstD->NameRef : 0) + Version;
 }
 
 /* Returns 1 if profile is not structurally compatible.  */
@@ -44,7 +45,8 @@
   __llvm_profile_header *Header = (__llvm_profile_header *)ProfileData;
   __llvm_profile_data *SrcDataStart, *SrcDataEnd, *SrcData, *DstData;
   SrcDataStart =
-      (__llvm_profile_data *)(ProfileData + sizeof(__llvm_profile_header));
+      (__llvm_profile_data *)(ProfileData + sizeof(__llvm_profile_header) +
+                              Header->BinaryIdsSize);
   SrcDataEnd = SrcDataStart + Header->DataSize;
 
   if (ProfileSize < sizeof(__llvm_profile_header))
@@ -63,7 +65,7 @@
       Header->ValueKindLast != IPVK_Last)
     return 1;
 
-  if (ProfileSize < sizeof(__llvm_profile_header) +
+  if (ProfileSize < sizeof(__llvm_profile_header) + Header->BinaryIdsSize +
                         Header->DataSize * sizeof(__llvm_profile_data) +
                         Header->NamesSize + Header->CountersSize)
     return 1;
@@ -91,7 +93,8 @@
   const char *SrcValueProfDataStart, *SrcValueProfData;
 
   SrcDataStart =
-      (__llvm_profile_data *)(ProfileData + sizeof(__llvm_profile_header));
+      (__llvm_profile_data *)(ProfileData + sizeof(__llvm_profile_header) +
+                              Header->BinaryIdsSize);
   SrcDataEnd = SrcDataStart + Header->DataSize;
   SrcCountersStart = (uint64_t *)SrcDataEnd;
   SrcNameStart = (const char *)(SrcCountersStart + Header->CountersSize);
diff --git a/compiler-rt/test/profile/Linux/binary-id.c b/compiler-rt/test/profile/Linux/binary-id.c
--- a/compiler-rt/test/profile/Linux/binary-id.c
+++ b/compiler-rt/test/profile/Linux/binary-id.c
@@ -10,6 +10,13 @@
 // RUN: llvm-profdata show --binary-ids  %t.profraw > %t.profraw.out
 // RUN: FileCheck %s --check-prefix=BINARY-ID-RAW-PROF < %t.profraw.out
 
+// RUN: rm -rf %t.profdir
+// RUN: env LLVM_PROFILE_FILE=%t.profdir/default_%m.profraw %run %t
+// RUN: env LLVM_PROFILE_FILE=%t.profdir/default_%m.profraw %run %t
+// RUN: env LLVM_PROFILE_FILE=%t.profdir/default_%m.profraw %run %t
+// RUN: llvm-profdata show --binary-ids  %t.profdir/default_*.profraw > %t.profraw.out
+// RUN: FileCheck %s --check-prefix=BINARY-ID-MERGE-PROF < %t.profraw.out
+
 void foo() {
 }
 
@@ -34,3 +41,10 @@
 // BINARY-ID-RAW-PROF-NEXT: Maximum internal block count: 0
 // BINARY-ID-RAW-PROF-NEXT: Binary IDs:
 // BINARY-ID-RAW-PROF-NEXT: {{[0-9a-f]+}}
+
+// BINARY-ID-MERGE-PROF: Instrumentation level: Front-end
+// BINARY-ID-MERGE-PROF-NEXT: Total functions: 3
+// BINARY-ID-MERGE-PROF-NEXT: Maximum function count: 3
+// BINARY-ID-MERGE-PROF-NEXT: Maximum internal block count: 0
+// BINARY-ID-MERGE-PROF-NEXT: Binary IDs:
+// BINARY-ID-MERGE-PROF-NEXT: {{[0-9a-f]+}}
diff --git a/llvm/include/llvm/ProfileData/InstrProfData.inc b/llvm/include/llvm/ProfileData/InstrProfData.inc
--- a/llvm/include/llvm/ProfileData/InstrProfData.inc
+++ b/llvm/include/llvm/ProfileData/InstrProfData.inc
@@ -129,6 +129,7 @@
 #endif
 INSTR_PROF_RAW_HEADER(uint64_t, Magic, __llvm_profile_get_magic())
 INSTR_PROF_RAW_HEADER(uint64_t, Version, __llvm_profile_get_version())
+INSTR_PROF_RAW_HEADER(uint64_t, BinaryIdsSize, __llvm_write_binary_ids(NULL))
 INSTR_PROF_RAW_HEADER(uint64_t, DataSize, DataSize)
 INSTR_PROF_RAW_HEADER(uint64_t, PaddingBytesBeforeCounters, PaddingBytesBeforeCounters)
 INSTR_PROF_RAW_HEADER(uint64_t, CountersSize, CountersSize)
@@ -137,7 +138,6 @@
 INSTR_PROF_RAW_HEADER(uint64_t, CountersDelta, (uintptr_t)CountersBegin)
 INSTR_PROF_RAW_HEADER(uint64_t, NamesDelta, (uintptr_t)NamesBegin)
 INSTR_PROF_RAW_HEADER(uint64_t, ValueKindLast, IPVK_Last)
-INSTR_PROF_RAW_HEADER(uint64_t, BinaryIdsSize, __llvm_write_binary_ids(NULL))
 #undef INSTR_PROF_RAW_HEADER
 /* INSTR_PROF_RAW_HEADER  end */
 
@@ -646,7 +646,7 @@
         (uint64_t)'f' << 16 | (uint64_t)'R' << 8 | (uint64_t)129
 
 /* Raw profile format version (start from 1). */
-#define INSTR_PROF_RAW_VERSION 6
+#define INSTR_PROF_RAW_VERSION 7
 /* Indexed profile format version (start from 1). */
 #define INSTR_PROF_INDEX_VERSION 7
 /* Coverage mapping format version (start from 0). */
diff --git a/llvm/lib/ProfileData/InstrProfReader.cpp b/llvm/lib/ProfileData/InstrProfReader.cpp
--- a/llvm/lib/ProfileData/InstrProfReader.cpp
+++ b/llvm/lib/ProfileData/InstrProfReader.cpp
@@ -366,6 +366,7 @@
   if (GET_VERSION(Version) != RawInstrProf::Version)
     return error(instrprof_error::unsupported_version);
 
+  BinaryIdsSize = swap(Header.BinaryIdsSize);
   CountersDelta = swap(Header.CountersDelta);
   NamesDelta = swap(Header.NamesDelta);
   auto DataSize = swap(Header.DataSize);
@@ -374,7 +375,6 @@
   auto PaddingBytesAfterCounters = swap(Header.PaddingBytesAfterCounters);
   NamesSize = swap(Header.NamesSize);
   ValueKindLast = swap(Header.ValueKindLast);
-  BinaryIdsSize = swap(Header.BinaryIdsSize);
 
   auto DataSizeInBytes = DataSize * sizeof(RawInstrProf::ProfileData<IntPtrT>);
   auto PaddingSize = getNumPaddingBytes(NamesSize);